2016 Division III football schedule Juniata
| Overall | Pct. | Conf. | Pct. | Streak | Home | Away | Neutral |
| 4-6 | .400 | 3-6 | .333 | Lost 4 | 2-3 | 2-3 | 0-0 |
| Date | Opponent | Result | Time/Status | Links |
| Sep. 3 | at Grove City | W, 31-26 | Final | BX RC |
| Sep. 10 | Dickinson * | W, 42-21 | Final | BX |
| Sep. 17 | at Gettysburg * | W, 41-35 | Final | BX RC |
| Sep. 24 | Franklin and Marshall * | L, 45-22 | Final | BX |
| Oct. 1 | at Johns Hopkins * | L, 52-17 | Final | BX RC |
| Oct. 15 | Ursinus * | W, 38-27 | Final | BX |
| Oct. 22 | at Muhlenberg * | L, 56-17 | Final | BX RC |
| Oct. 29 | McDaniel * | L, 20-13 | Final | BX |
| Nov. 5 | Moravian * | L, 42-30 | Final | BX |
| Nov. 12 | at Susquehanna * | L, 63-34 | Final | BX |
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